PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14731_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 134aa    MW: 14886.2 Da    PI: 6.54
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14731_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-191666255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr+++ +g+++AeIrd ++ g   r++lg+f tae+Aa+a+++a+ +++g
  RrC14731_p1 16 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFETAEDAARAYDRAAYSMRG 66
                 79*******.**********65443..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.50E-171675No hitNo description
Gene3DG3DSA:3.30.730.101.3E-311676IPR001471AP2/ERF domain
PROSITE profilePS5103223.3931674IPR001471AP2/ERF domain
PfamPF008471.3E-131666IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-231676IPR016177DNA-binding domain
SMARTSM003801.4E-341680IPR001471AP2/ERF domain
PRINTSPR003673.8E-111728IPR001471AP2/ERF domain
PRINTSPR003673.8E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDQGSRSGGG GAEQGKFRGV RRRPWGKYAA EIRDSRKHGE RVWLGTFETA EDAARAYDRA  60
AYSMRGQAAI LNFPHEYNMG SGSSSNSAAT AATSSSSRQV FEFEYLDDSV LDELLEYGEN  120
YNKINNINMG NNRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-281780669ATERF1
2gcc_A3e-281780669ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324370.0AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660293.14e-63PREDICTED: ethylene-responsive transcription factor 14
SwissprotP938222e-58ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLA0A078IT592e-65A0A078IT59_BRANA; BnaAnng12120D protein
STRINGBra032512.1-P2e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.16e-44Ethylene-responsive element binding factor 14